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Study spotlights 3-D mouse brain atlas

The third time’s the charm for the Allen Institute for Brain Science’s 3-D atlas of the mouse brain.

Version 3 of the atlas, known as the Allen Mouse Brain Common Coordinate Framework or CCFv3, is the subject of a research paper published today in the journal Cell. It builds on a partial brain map that focused on the mouse cortex and was released in 2016.

Previous versions of the atlas were rendered with lower-resolution 3-D maps. The latest high-resolution maps are fine enough to pinpoint the locations of individual brain cells — which is crucial for interpreting datasets that contain thousands or millions of pieces of information.

“In the old days, people would define different regions of the brain by eye. As we get more and more data, that manual curation doesn’t scale anymore,” Lydia Ng, senior director of technology at the Seattle-based Allen Institute for Brain Science, explained in a news release. “Just as we have a reference genome sequence, you need a reference anatomy.”

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By Alan Boyle

Mastermind of Cosmic Log, contributing editor at GeekWire, author of "The Case for Pluto: How a Little Planet Made a Big Difference," president of the Council for the Advancement of Science Writing. Check out "About Alan Boyle" for more fun facts.

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