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Scientist tracks where consciousness comes from

Claustrum neurons
A digital 3-D reconstruction shows a handful of neurons that wrap around a mouse’s brain and are connected to a sheet of brain cells known as the claustrum. (Allen Institute for Brain Science)

SAN FRANCISCO — For decades, neuroscientist Christof Koch has been searching for the seat of consciousness — a quest that has taken him deep within the brains of mice, and to the doorstep of the Dalai Lama.

Now the president and chief scientific officer of Seattle’s Allen Institute for Brain Science is closing in on a big part of the answer in a small part of the brain.

The part in question is known as the claustrum, a thin, irregular sheet of neurons that’s found in each hemisphere of the brain, underneath the cortex.

Koch and the late biologist Francis Crick, a co-discoverer of DNA’s double helix structure, took note of the claustrum more than a decade ago — but it’s taken that long for experimental techniques to progress to the point where neuroscientists can literally shed light on how the claustrum and its network of connected neurons work.

“It connects to every point of the cortex, bidirectionally,” Koch said Oct. 27 at the World Conference of Science Journalists in San Francisco. “Crick and I hypothesized that the function of the claustrum is to do something like consciousness. In a sense, it acts like the conductor of the cortical symphony.”

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Data harvested from bits of living human brains

Brain slices
Slices of human brain tissue, extracted from patients during neurosurgery, are kept alive in a special bath of chilled, oxygenated fluid. (Allen Institute for Brain Science)

Zapping brain cells from living human tissue? It sounds like a creepy Halloween tale, but for the Allen Institute for Brain Science, it’s a clever way to understand more fully how the brain works — and potentially bring healing to future patients.

“It doesn’t creep me out at all,” Jonathan Ting, an assistant investigator at the Seattle institute who’s been deeply involved in the project, told GeekWire. “I feel like it’s our obligation as scientists.”

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Scientist maps path to merge humans and machines

Christof Koch
Christof Koch, chief scientific officer for the Allen Institute for Brain Science, addresses the GeekWire Summit. (Photo by Dan DeLong for GeekWire)

It may sound like a zombie movie, but Seattle’s Allen Institute for Brain Science is studying fresh human brain tissue to see up close how our neurons work — and perhaps eventually figure out how to meld minds with machines.

Integrating artificial intelligence chips into our own neural wiring may be the best way to address concerns about the rapid rise of AI, and the potential that the machines could outpace humans, said neuroscientist Christof Koch, the institute’s chief scientific officer.

Studying the brain should be a “matter of great urgency,” whether you believe that AI will lead to a work-free paradise or a Terminator-style nightmare, Koch said today at the 2017 GeekWire Summit.

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Mozak turns brain mapping into video game

Mozak video game
Mozak employs citizen scientists and gamers to trace the intricate shapes of neurons, as shown by the purple lines above, and to speed fundamental brain science research. (UW Graphic)

game called Mozak is turning thousands of Internet users into “tracers” who help neuroscientists map out the tangled circuitry of brain cells.

The citizen-science project was created by the University of Washington’s Center for Game Science in partnership with the Allen Institute for Brain Science.

Mozak took a share of the spotlight at last October’s White House Science Fair, but the project is just now coming out of beta. In a news release, UW says results gleaned from the game have helped the Allen Institute’s researchers reconstruct neurons 3.6 times faster than previous methods.

Guided by online tutorials, the game’s tracers can produce neuron reconstructions that are 70 to 90 percent complete, compared to the 10 to 20 percent success rate for the most effective computer-generated reconstructions.

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How Elon Musk plans to put chips in brains

Electrode-equipped cap
A researcher wears an electrode-equipped cap in an experiment aimed at demonstrating direct brain control of a computer. (University of Washington / National Science Foundation via YouTube)

Three weeks after word leaked out that billionaire deep-thinker Elon Musk was backing a venture called Neuralink, his detailed vision for linking brains and computers is laid out in a 36,000-word white paper.

Complete with stick figures.

To explain it all for us, Musk turned to Tim Urban, the creator of the Wait But Why website. Urban has crafted similarly illustrated long reads about the SpaceX rocket company and the Tesla electric company, the two ventures that currently occupy most of Musk’s time as CEO.

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Elon Musk backs venture to link brains and AI

Elon Musk
Elon Musk muses at SpaceX’s Mission Control. (SpaceX Photo)

Billionaire brainiac Elon Musk is following up on his interest in (and wariness about) artificial intelligence by backing Neuralink Corp., a company devoted to developing neural implants, The Wall Street Journal says.

Business filings suggest that Neuralink would build devices designed to treat or diagnose neurological conditions, and conceivably augment human cognitive powers.

The Journal quoted entrepreneur-futurist Max Hodak as confirming Musk’s involvement in Neuralink, which Hodak said was still an “embryonic” venture.

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Allen Institute leaders share Big Science vision

Allen Institute
Allen Institute executives say their operation can serve as a model for future research.

Big Science, Team Science, Open Science: In this week’s issue of Neuron, two top executives at Seattle’s Allen Institute for Brain Science lay out a manifesto for the future of large research projects.

Christof Koch, the institute’s president and chief scientific officer, joins forces with President and CEO Allan Jones to explain why they think the approach developed by Microsoft co-founder Paul Allen provides a model for understanding the brain, the genome and other scientifically complex phenomena.

“One gifted professor working with her graduate student and post-doctoral fellow in isolation will not tame the vast beast that is the genome and the brain,” they write.

Instead, they point to the team approach that’s best exemplified by the legions of physicists who contributed to the discovery of the Higgs Boson at the Large Hadron Collider in Europe, and the detection of crashing black holes by the Laser Interferometer Gravitational-Wave Observatory.

Big Neuroscience isn’t yet in the same league as Big Physics: The LHC’s experimental groups add up to more than 10,000 scientists and engineers, while a mere 100 researchers contribute to the Allen Brain Observatory. Nevertheless, Koch and Jones say they’re learning important lessons from the institute’s experiments in Team Science.

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Allen Institute creates 3-D guide to the brain

Brain map
This image shows a cross-section from the “average” brain that serves as the basis for the Allen Institute’s 3-D mouse cortex map. A single neuron has been mapped onto the cortex in purple at upper left. (Credit: Allen Institute for Brain Science

After years of painstaking work, Seattle’s Allen Institute for Brain Science has completed a digital 3-D map of the mouse cortex, filled out with annotations that trace the brain’s neurons, genetic correlations and the connections between different functional regions.

The project provides a standardized coordinate system that should help neuroscientists place data points like pins dropped on an online map, but in three dimensions.

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The musical instrument you play with your mind

Encephalophone
Neurologist Thomas Deuel practices on the encephalophone in preparation for a gig. (Credit: 9e2)

How many musical instruments can you play without moving a muscle? There’s at least one: the encephalophone, which turns brain waves into tunes with a beat you can dance to.

Swedish Hospital neurologist Thomas Deuel will show how it’s done, with the accompaniment of a musical ensemble, on Oct. 22 at Seattle’s King Street Station as part of the 9e2 arts and technology festival. There’ll be an encore performance on Oct. 24.

Various types of encephalophones have been around for decades, but Deuel’s contraption (patent pending) has a clinical twist: He developed his version to help train the brains of patients who suffer from neurological diseases, strokes or spinal cord injuries.

“At first, I wanted to make a new musical instrument. I thought it’d be really fun and interesting from an artistic standpoint and music standpoint,” Deuel said at this week’s MIT Enterprise Forum on augmented humans. “But as I developed it, I learned a lot about the feedback aspect, and I started thinking, ‘Well, I have all these patients with disabilities … how can I use this for therapeutics?”

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Brain atlas gets printed … all 350 pages’ worth

Image: Human brain atlas
These are just a few of the brain images that appear in a newly published atlas of the human brain. (Credit: Allen Institute for Brain Science)

As neuroscience marches on, researchers are creating more and more brain mapsand atlases – but the Allen Human Brain Reference Atlas is a rarity. This week it’s actually being published as a 350-page atlas you can hold in your hands.

Like most brain references, the detailed map of a single human brain is available online. The Allen Institute for Brain Science’s reference atlas shows brain structure down to the cellular level, at a resolution of 1 micron per pixel. The anatomical map, based on trillions of bytes of imaging data, is supplemented by readings from two different types of brain scans.

This sort of atlas usually stays online. In contrast, the illustration-heavy Comprehensive Cellular-Resolution Atlas of the Adult Human Brain takes up pretty much all of the latest issue of the Journal of Comparative Neurology.

“It’s actually a highly unusual publication. … We’re pretty much lacking in structural maps of the human brain,” Allen Institute neuroscientist Ed Lein, the study’s senior author, told GeekWire. By some accounts, it could be the first such anatomical map of the full human brain to make its print debut in more than a century.

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